• Utilities: Python and xjView reports

    I use xjView to visualize statistical maps most of the time. One reason why, is that it's report function generates a lot of useful information, including not only the peak MNI coordinates and peak intensity, but also a breakdown of the number of voxels within each cluster than within specific AAL labels (is that parahippocampal or amgydala?). I also use these reports when I need to generate tables for manuscripts. The processes isn't overly elegant, but it's functional: Load the stats image. Generate the xjView report. Paste the report from the MATLAB command window into a *.txt document. Convert the *.txt document into a comma-separated table. Open the CSV tables…